If you want to indicate that a differing opinion or a criticism is not intended as a personal attack (which is what I interpret the phrase “with all due respect” to mean), a common phrase is:
bona venia tua dixerim
I'd like to say with your gracious permission
Likewise you can also say:
pace tua dixerim
I'd like to say without disturbing your peace
i.e.: no offence to you intended
pace Ciceronis/horum/… dixerim
I'd like to say without disturbing Cicero's/their/… peace
i.e.: no offence toward Cicero/them/… intended
I inserted a “without disturbing” because that is how I interpret the ablative here, although there is no “undisturbed” in the Latin; that being so, salva pace alicujus (so-and-so's peace intact) makes perfect sense to me -- it just does not appear to be classically attested.
Other possible expressions:
venia sit dicto
absit invidia verbo
But what probably comes closest to “with all due respect” in its literal meaning are these:
cum praefatione honoris
honos sit auribus
Honorem dicere/praefari (literally “to say, to preface one's words with the proper marks of respect”) means “to make an excuse before saying something potentially objectionable.”
All these are good, classical Latin according to Johann Philipp Krebs, who was a bit of an authority on what is good and classical and what is not. He rejects salva venia as Neo-Latin (the horror!) and does not mention salva pace.